Dock Ligands (LibDock)

Information
 
Status
Success
 
User
16606
Elapsed Time
00:01:42
Start
09/24/22 10:42:07
Finish
09/24/22 10:43:49
Server Name
DS Version
19.1.0.18287
PP Version
19.1.0.1963
DS Client Version
19.1.0.18287
Server Ports
9944 (9943)
OS Distribution
Windows
OS Version
10.0.22000
Memory Total
23.85 GB
Memory Free
12.39 GB
Summary
Input ligands: 1
Conformers generated: 52
Poses docked: 100
Poses filterd: 69
Poses minimized: 31
Parameters
Protocol Settings
 
Input Receptor
 
Input Ligands
 
Input Site Sphere
-17.0041, 6.71975, -15.0922, 9.73833
 
Number of Hotspots
100
 
Docking Tolerance
0.25
Docking Preferences
High Quality
Max Hits to Save
100
Max Number of Hits
100
Minimum LibDockScore
100
Final Score Cutoff
0.5
Max BFGS Steps
50
Rigid Optimization
False
Keep Hydrogens
False
Max Conformation Hits
30
Max Start Conformations
1000
Steric Fraction
0.10
Final Cluster Radius
0.5
Apolar SASA Cutoff
15.0
Polar SASA Cutoff
5.0
Surface Grid Steps
18
Conformation Method
FAST
Maximum Conformations
255
Discard Existing Conformations
True
Energy Threshold
20.0
DSReport Summary
False
Separate Conformations
True
Minimization Algorithm
Smart Minimizer
RMSD Cutoff
1.0
Flexible Residues
Minimization Max Steps
1000
Minimization RMS Gradient
0.001
Minimization Energy Change
0.0
Minimization Forcefield
CHARMm
Minimization Sphere of Flexible Atoms
Implicit Solvent Model
Distance-Dependent Dielectrics
Dielectric Constant
1
Implicit Solvent Dielectric Constant
80
Generalized Born Lambda Constant
Minimum Hydrogen Radius
0.8
Use Non-polar Surface Area
True
Non-polar Surface Constant
0.92
Non-polar Surface Coefficient
0.00542
Salt Concentration
0.0
Input Atomic Radii
van der Waals radii
Use Molecular Surface
True
Nonbond List Radius
13.0
Nonbond Higher Cutoff Distance
12.0
Nonbond Lower Cutoff Distance
9.0
Advanced
Verbose
0
sp2-sp2 rotation
True
Grid Scoring
True
Hotspots File
Parallel Processing
False
Batch Size
25
Server
localhost
Server Processes
2
Preserve Order
True

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