Prepare Protein

Information

Status

Success

User

16606

Elapsed Time

00:01:21

Start	09/24/22 10:31:48
Finish	09/24/22 10:33:09

Server Name

AbdusemiAbduweli

DS Version	19.1.0.18287
PP Version	19.1.0.1963
DS Client Version	19.1.0.18287
Server Ports	9944 (9943)
OS Distribution	Windows
OS Version	10.0.22000
Memory Total	23.85 GB
Memory Free	12.28 GB

Summary

Side-Chain Refinement: 3GEN

Forcefield: CHARMm

Number of residues refined: 6

1 missing segments found from SEQRES data: (Missing segments containing non-standard residues or more than 20 residues, and missing residues at N and C termini are ignored)

Loop 1: 3 residues missing at 3GEN:A:GLY409, missing loop sequence=TGQ

Details

Alternate Conformations

Deleted alternate conformations from 4 residue(s) A:SER649 A:SER604 A:CYS481 A:SER453

Standardize Names

No names have been changed

Complete Residues

Incomplete side-chains handled for 7 residue(s) Side-chain completed for residue A:PHE413 Side-chain completed for residue A:LYS433 Side-chain completed for residue A:GLN467 Side-chain completed for residue A:GLN496 Side-chain completed for residue A:THR552 Side-chain completed for residue A:VAL555 Side-chain completed for residue A:LYS637

Bonding and bond orders

Bonds and bond orders have been checked and corrected if necessary

Terminus modification

1 terminal residue(s) adjusted

Atom ordering

Reordered atoms in 1 residue(s) A:GLU658

Side Chain Refinement

Excluded residues removed (1): A:PHE413

Residues used in the calculation (6): A:LYS433 A:GLN467 A:GLN496 A:THR552 A:VAL555 A:LYS637

Loops added with InsertAminoAcidChain

A:THR410-A:GLN412

Loops minimized